PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G055800.1 | ||||||||
Common Name | B456_011G055800, LOC105776546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20776.6 Da PI: 7.3631 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.3 | 3.4e-22 | 30 | 74 | 4 | 48 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 e +s+rqvtfskRr+g++KKA+ELS+LC+a+v v+ +s++g++y+ Gorai.011G055800.1 30 EVESKRQVTFSKRRQGLFKKAKELSTLCGADVGVLTISKSGRVYT 74 6689***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.278 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-25 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-21 | 19 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-18 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-22 | 30 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-18 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-18 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEDVAMLITT EAKKARSSRG RQRIEIKKLE VESKRQVTFS KRRQGLFKKA KELSTLCGAD 60 VGVLTISKSG RVYTTDDVDI VLDRRLAESS PSHGNDSVRR QNEVVERRTN AGFGLDELIE 120 NLAVEKLVEY VAALKELREK AAFRLEELSI QDSSYLWPFV ADREVTKDEF VNNFMAEVKD 180 YN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454713.1 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0D2T306 | 1e-128 | A0A0D2T306_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G055800.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 6e-26 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G055800.1 |
Entrez Gene | 105776546 |
Publications ? help Back to Top | |||
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