PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G055800.1

Common Name

B456_011G055800, LOC105776546

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 20776.6 Da PI: 7.3631

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G055800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.3	3.4e-22	30	74	4	48
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 e +s+rqvtfskRr+g++KKA+ELS+LC+a+v v+ +s++g++y+ Gorai.011G055800.1 30 EVESKRQVTFSKRRQGLFKKAKELSTLCGADVGVLTISKSGRVYT 74 6689***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.278	19	79	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.3E-25	19	78	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-21	19	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-18	21	41	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-22	30	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-18	41	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-18	56	77	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEDVAMLITT EAKKARSSRG RQRIEIKKLE VESKRQVTFS KRRQGLFKKA KELSTLCGAD 60 VGVLTISKSG RVYTTDDVDI VLDRRLAESS PSHGNDSVRR QNEVVERRTN AGFGLDELIE 120 NLAVEKLVEY VAALKELREK AAFRLEELSI QDSSYLWPFV ADREVTKDEF VNNFMAEVKD 180 YN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454713.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2T306	1e-128	A0A0D2T306_GOSRA; Uncharacterized protein
STRING	Gorai.011G055800.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	6e-26	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G055800.1
Entrez Gene	105776546

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]