PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G051200.1
Common NameB456_011G051200, LOC105776860
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 172aa    MW: 18553 Da    PI: 8.1502
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G051200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.57.2e-46141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+
  Gorai.011G051200.1  14 PCAACKLLRRRCAHDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDTLQ 104
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++lal+++e
  Gorai.011G051200.1 105 TQLALAQAE 113
                         ****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.58713114IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKESGGRKQG AASPCAACKL LRRRCAHDCV FAPYFPADEP HKFANVHKVF GASNVNKMLQ  60
ELPVHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DTLQTQLALA QAEVVHLRVR  120
QTASYSHHGF APTSPTNSGS PSSNHGSQVK PIFDMDVVMD QASLGEPMWS C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-50101157112LOB family transfactor Ramosa2.1
5ly0_B4e-50101157112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3948062e-86GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455253.11e-127PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE94e-79LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0D2UNR81e-125A0A0D2UNR8_GOSRA; Uncharacterized protein
TrEMBLA0A2P5Q7G31e-125A0A2P5Q7G3_GOSBA; Uncharacterized protein
STRINGGorai.011G051200.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-71LOB domain-containing protein 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]