PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G044100.1
Common NameB456_011G044100, LOC105776496
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 469aa    MW: 52568.5 Da    PI: 8.6383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G044100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-17154200148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT +Ed +l+++vkq+G + W+ Ia+ +  gR +kqc++rw+++l
  Gorai.011G044100.1 154 KGQWTDDEDRKLIRLVKQYGVRKWAQIAESLV-GRAGKQCRERWHNHL 200
                         799*****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17206248145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ +l++a+++ G++ W+ Ia+ ++ gRt++ +k++w+
  Gorai.011G044100.1 206 KDSWSEEEERILIEAHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 248
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.107149204IPR017930Myb domain
SuperFamilySSF466891.22E-30152247IPR009057Homeodomain-like
SMARTSM007172.0E-16153202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-27155208IPR009057Homeodomain-like
PfamPF139211.3E-19157214No hitNo description
CDDcd001671.62E-15157200No hitNo description
SMARTSM007179.1E-18205253IPR001005SANT/Myb domain
PROSITE profilePS5129421.601205255IPR017930Myb domain
CDDcd001672.36E-14208251No hitNo description
Gene3DG3DSA:1.10.10.602.7E-21209253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEEVRGRRVA FGYGNLLCNN NCKPSLCKSS PPLSAIDRFL WGQTQSLSSH SQAAHQPPYS  60
VQNNVKINKG TVLGSTAAAL LRGFSFPSDA IGGYLPRQTN FEESFLDGLF VDGEILALTE  120
DKNPNKEMKA SMKGDFPKGV VKRNKKVASA ALIKGQWTDD EDRKLIRLVK QYGVRKWAQI  180
AESLVGRAGK QCRERWHNHL RPDIKKDSWS EEEERILIEA HAKVGNRWAE IAKFIPGRTE  240
NAIKNHWNAT KRRQNSRKKN KQNDNQNGKP QSSILQDYIR SQNLNTPTNS STTSATPSSS  300
TFSEDLSTQF KYFLPEPSES DDSHPLVVQT YDDELMFMQN FFANNNNTIH PSLDYSQTGN  360
PTEVFKPVHF VDHNLSKGSS TIDCPTFADT RFGFSSIQEP KNEPRTTYLF SDLYLSRLLN  420
GATTSSFPNG DGYYNGDVNT NLLSGQASSD GRKEMDLIEM VSSSQFYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-471522542104C-Myb DNA-Binding Domain
1msf_C2e-471522542104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454623.10.0PREDICTED: transcription factor MYB44-like isoform X1
TrEMBLA0A0D2T2910.0A0A0D2T291_GOSRA; Uncharacterized protein
STRINGGorai.011G044100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-66myb domain protein 119
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]