 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.011G039600.2 |
| Common Name | B456_011G039600 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
Trihelix |
| Protein Properties |
Length: 214aa MW: 23781.1 Da PI: 10.6354 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.011G039600.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52.7 | 1.1e-16 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + +s++p+f++l+
Gorai.011G039600.2 32 CWSEEATSTLVDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKTRVSSSNGTLTSSWPFFERLD 122
7****************************************99999**************************9999888899*******98 PP
trihelix 87 a 87
a
Gorai.011G039600.2 123 A 123
5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MADLTDSVMQ SAVITPPSTT PNTRTLPVRE DCWSEEATST LVDAWGRRYV ELNRGNLRQK 60
DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KTRVSSSNGT LTSSWPFFER 120
LDALIGSNFA AKKLSTSPKI SPKPSPRLSP RIPGSPPVAL PLLLPYRRTP PAPTAIVALP 180
QKRPAVDDGY FKRNYSGRDE EIGKSSRKVW SSV*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 2e-43 | sequence-specific DNA binding transcription factors |
