PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G034000.1

Common Name

B456_011G034000, LOC105777421

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 259aa MW: 28731.8 Da PI: 8.8175

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G034000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	70	116	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP + +K++Ka+ L ++v+ +k+L Gorai.011G034000.1 70 KSHSEAERRRRERINAHLDTLRTLLPYR-----EKMDKATLLGEVVRQVKEL 116 58***********************8.....8*********9988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.421	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-10	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-12	71	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-13	71	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAASYFNNKI FLSGNCYSGF LDPFSRDLGP CNGISQSLVL DNEKSELVVK SPVKVGKKSV 60 SEEKVIAALK SHSEAERRRR ERINAHLDTL RTLLPYREKM DKATLLGEVV RQVKELKKAA 120 TEASKGVLVP VDDDEVIVET CHDEANGTYC FKASICCDYR PQLLTDLRQA LDALPIKMVK 180 AEISTLGSRL RKDFVFTGCR TTANGDDAES RQYLAGSVRR ALNSVLEKAS ISPEYLPYST 240 FPKKRQRISY FDSSSSSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456134.1	0.0	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A0D2T1R4	0.0	A0A0D2T1R4_GOSRA; Uncharacterized protein
STRING	Gorai.011G034000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15581	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G034000.1
Entrez Gene	105777421

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]