PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G028400.1
Common NameB456_011G028400, LOC105777317
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 187aa    MW: 20967.6 Da    PI: 9.4142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G028400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-111465255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                        r+  + +Er+RR++++  ++eL +l+P+    +s+   s  + L +A +YIk Lq
  Gorai.011G028400.1 14 RTDRKLIERNRRNQMKALYSELNSLVPHY---NSREsISLPDQLGEAANYIKRLQ 65
                        778899**********************7...55555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5981264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-131383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-81465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-71469No hitNo description
Gene3DG3DSA:4.10.280.101.7E-121478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-51870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEINSNNPNN FSSRTDRKLI ERNRRNQMKA LYSELNSLVP HYNSRESISL PDQLGEAANY  60
IKRLQTNLER MKQRKDSLIS GGQSMNIASS RTGFSPKVPQ IQIHEMGSSL VIGLTTDTHS  120
RFIFNDTIRI LHEEGADIVN ASFSVVGNTA FHTIHLTVGE LTPDYHGVAV TRIAERLNKF  180
IYDAHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5899771e-133JX589977.1 Gossypium hirsutum clone NBRI_GE24781 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455976.11e-136PREDICTED: transcription factor bHLH125-like isoform X1
TrEMBLA0A0D2ULK21e-135A0A0D2ULK2_GOSRA; Uncharacterized protein
STRINGGorai.011G028400.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-43bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]