PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G027400.1

Common Name

B456_011G027400, LOC105777534

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 221aa MW: 25490.5 Da PI: 8.472

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G027400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.3	1e-32	24	128	2	103
HHHHHHHHHC............TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 Flkklyeile............deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl k+y +le +++ k+++sw+++g+ fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ we Gorai.011G027400.1 24 FLAKTYALLEegeeeesgeegcSRRRKKIVSWNDEGTGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSRR---------WE 105 99******6666555555555599**********************************************9998......... PP EEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkkse 103 Fkh++F++g k++l +i rkkse Gorai.011G027400.1 106 FKHEKFQRGYKQMLMEITRKKSE 128 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.3E-34	15	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.3E-40	20	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.67E-26	20	125	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-28	24	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MMSNKMSSNY SSLSSPKAKG PAPFLAKTYA LLEEGEEEES GEEGCSRRRK KIVSWNDEGT 60 GFVVWSPAEF SDLTLPRYFK HNNFSSFIRQ LNTYGFKKTS SRRWEFKHEK FQRGYKQMLM 120 EITRKKSEPS VFPAFLKASS SSDDHQDHHH HQIMNGGSSA VDEESTYVHR QTLMEENQNL 180 RREKVELQTQ IAQFKDLQIK LLDCIAQHTG TSDHKETRLC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-15	1	125	3	129	Heat shock factor protein 1
5d5v_B	2e-15	1	125	3	129	Heat shock factor protein 1
5d5v_D	2e-15	1	125	3	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067414	0.0	KR067414.1 Gossypium hirsutum HSF33 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456316.1	1e-166	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A0D2UN80	1e-165	A0A0D2UN80_GOSRA; Uncharacterized protein
STRING	Gorai.011G027400.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16597	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	1e-34	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	Gorai.011G027400.1
Entrez Gene	105777534

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]