PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G020100.3 | ||||||||
Common Name | B456_011G020100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27323.7 Da PI: 8.6097 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5.3e-06 | 138 | 175 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.011G020100.3 138 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 175 67788899********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.087 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-12 | 136 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-9 | 136 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.38E-6 | 136 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDSTYECPPT LLFDTDPQQQ SVFNNNNQSI NYMSCSSLSS SPSWPKLAPP LTTKQQQQPP 60 VGTGTLQFSN NTSFWNASAT GNILPSLYEE KPNCPTLTTK TNIEEVRKNS NSKKASNETP 120 LKRPRLETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN 180 VLSTPYMKQA AASIQQSTDK LKDHQEGPKQ DLRSRGLCLV PVSSTFPVAN ETPADFWTPT 240 FGGTFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147230 | 1e-54 | EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457544.1 | 1e-180 | PREDICTED: transcription factor bHLH112-like | ||||
Swissprot | Q94JL3 | 2e-62 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A0D2VH40 | 0.0 | A0A0D2VH40_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G020100.1 | 1e-180 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 2e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G020100.3 |
Publications ? help Back to Top | |||
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