PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G020100.1

Common Name

B456_011G020100, LOC105778399

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 353aa MW: 38707.2 Da PI: 5.7981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G020100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	244	281	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.011G020100.1 244 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 281 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.087	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-9	242	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-12	242	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.93E-6	242	285	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAEEFQAAIC GGGGGTWWNI PTKTMFSGCN SPLYSTTIAD MGSFGWGNDM VATDDIIIKP 60 RSCYNSDNSG TNNNSSILID STLGFGLSSS DNWNQSLLRS NNQEFPMDST YECPPTLLFD 120 TDPQQQSVFN NNNQSINYMS CSSLSSSPSW PKLAPPLTTK QQQQPPVGTG TLQFSNNTSF 180 WNASATGNIL PSLYEEKPNC PTLTTKTNIE EVRKNSNSKK ASNETPLKRP RLETPSPLPT 240 FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVNVLST PYMKQAAASI 300 QQSTDKLKDH QEGPKQDLRS RGLCLVPVSS TFPVANETPA DFWTPTFGGT FR*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAEEFQAAIC GGGGGTWWNI PTKTMFSGCN SPLYSTTIAD MGSFGWGNDM VATDDIIIKP  60
RSCYNSDNSG TNNNSSILID STLGFGLSSS DNWNQSLLRS NNQEFPMDST YECPPTLLFD  120
TDPQQQSVFN NNNQSINYMS CSSLSSSPSW PKLAPPLTTK QQQQPPVGTG TLQFSNNTSF  180
WNASATGNIL PSLYEEKPNC PTLTTKTNIE EVRKNSNSKK ASNETPLKRP RLETPSPLPT  240
FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVNVLST PYMKQAAASI  300
QQSTDKLKDH QEGPKQDLRS RGLCLVPVSS TFPVANETPA DFWTPTFGGT FR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394769	1e-125	GQ394769.1 Gossypium hirsutum cultivar Deltapine 90 clone MONCS1792 SSR marker DC40367 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457544.1	0.0	PREDICTED: transcription factor bHLH112-like
Swissprot	Q94JL3	7e-72	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A0D2RFK5	0.0	A0A0D2RFK5_GOSRA; Uncharacterized protein
STRING	Gorai.011G020100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	6e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G020100.1
Entrez Gene	105778399

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]