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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.011G016200.3 |
| Common Name | B456_011G016200 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 495aa MW: 55376.3 Da PI: 5.9158 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.011G016200.3 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.2 | 7.9e-20 | 66 | 121 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r++ +++t+ q++e+e+lF+++++p+ ++r++L+++lgL+ qVk+WFqN+R++ k
Gorai.011G016200.3 66 RKRYHRHTQRQIQEMEALFKECPHPDDKQRKQLSRELGLDPLQVKFWFQNKRTQLK 121
688899**********************************************9877 PP
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| 2 | START | 208 | 3.7e-65 | 254 | 476 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla... 77
ela +a++el+++a+++ep+Wv++ + +n+ e+l++f+++ + +++ea+r+ ++ +m++++lve+l+d++ qW++ +
Gorai.011G016200.3 254 ELAVTAMEELIRMAQSGEPLWVTDEnsiDVLNENEYLRIFPRGIGskpfanlgFRSEASREAALIIMNPVNLVEILMDVN-QWSRVFCgiv 343
57899*********************99**************999***********************************.******9999 PP
.EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
+a+tl+v+s+g galq+m+ae+q++splvp R+ +f+Ry++++ +g w++vdvS+d+ ++ p + R++++pSg+li++++ng
Gorai.011G016200.3 344 sRAMTLDVLSTGiagnynGALQVMTAEFQLPSPLVPtRENYFARYCKRHHDGIWAVVDVSLDNLRHAP----FTRCRRRPSGCLIQELPNG 430
9*****************************************************************99....9****************** PP
EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
+skv+wve+v++++r ++ +++ lv+++la+gak+wvatl+rqce+
Gorai.011G016200.3 431 YSKVIWVENVEVDDRGVSDIYKTLVNTSLAFGAKRWVATLDRQCER 476
********************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 495 aa
Download sequence Send
to blast |
MFNSDLYENL NMFDMFQRPS DSDQTERNGD DDNNDTKSGT EVDAPSADDD NQGPASSGPS 60
RRRAKRKRYH RHTQRQIQEM EALFKECPHP DDKQRKQLSR ELGLDPLQVK FWFQNKRTQL 120
KAQTERHENG LLKAENEKLR AENHRYKEAL NNTSCPTCGG PAALGEMSFE EQHLRLENAR 180
LREEIERISG VTAKYVGKPI GPSFSRFADR APISFGTQPE FLGEYGGPGG GGGLGEVLRP 240
VSVTNEADKP LIVELAVTAM EELIRMAQSG EPLWVTDENS IDVLNENEYL RIFPRGIGSK 300
PFANLGFRSE ASREAALIIM NPVNLVEILM DVNQWSRVFC GIVSRAMTLD VLSTGIAGNY 360
NGALQVMTAE FQLPSPLVPT RENYFARYCK RHHDGIWAVV DVSLDNLRHA PFTRCRRRPS 420
GCLIQELPNG YSKVIWVENV EVDDRGVSDI YKTLVNTSLA FGAKRWVATL DRQCERLASA 480
MANSIPAGDL GGNI*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX615980 | 1e-179 | JX615980.1 Gossypium hirsutum clone NBRI_GE60293 microsatellite sequence. |
