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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.011G011700.1 |
Common Name | B456_011G011700, LOC105776833 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
TALE |
Protein Properties |
Length: 352aa MW: 39746.5 Da PI: 6.4506 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.011G011700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 278 | 312 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yps++++ LA+++gL+++q+ +WF N+R ++
Gorai.011G011700.1 278 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 312
569*****************************885 PP
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2 | ELK | 35.6 | 2e-12 | 232 | 253 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK+ Ll+ YsgyLgsLkqEF+
Gorai.011G011700.1 232 ELKDKLLQRYSGYLGSLKQEFM 253
9********************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MEGGSNSTSC MLAFGHNNNT CNGPCHVSMM PSMSSHHHHH MDSNNPLFLP LPPTNNQDPN 60 HNSTSGSPSM ILNNTGCYFM ENNNNDDDGS SSSSMKAKIM SHPHYHRLLA AYVNCQKVGA 120 PPEVVARLEE ACATAATVGG TSSTSYMGED PALDQFMEAY CEMLIKYEQE LSKPFKEAMV 180 FLQRIECQFK ALTVSSSNSA YGTETFERNG SSEEETDVNN KSFIDPLAED RELKDKLLQR 240 YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL AESTGLDQKQ 300 INNWFINQRK RHWKPSEDMQ FVVMDGTHNP HYFMDNVVGN PFPMDLSPTF L*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 247 | 256 | LKQEFMKKRK |
2 | 253 | 257 | KKRKK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. |
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help
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Source |
Description |
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |