PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 313aa MW: 36471.8 Da PI: 6.6495

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G236700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160	9.6e-50	26	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 l pGfrFhPtdeelv +yLk+kve+k +++ + ik+vdiyk++PwdLpk + + +ekewyfF+kr +ky+++ r+nr+t sg+Wka Gorai.010G236700.1 26 LLPGFRFHPTDEELVGFYLKRKVEKKLFTI-DLIKHVDIYKFDPWDLPKvskiS--StvGEKEWYFFCKRGRKYKNSIRPNRVTVSGFWKA 113 579**********************999.99***********645443..244899************************* PP NAM 86 tgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+++ +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Gorai.010G236700.1 114 TGIDKPIYGVgeyhNNSIIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 160 ****9877777778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-54	25	185	IPR003441	NAC domain
PROSITE profile	PS51005	54.093	26	185	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	28	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEDVEMEKMV SCNTAAAAEE EEEDILLPGF RFHPTDEELV GFYLKRKVEK KLFTIDLIKH 60 VDIYKFDPWD LPKVSKISST VGEKEWYFFC KRGRKYKNSI RPNRVTVSGF WKATGIDKPI 120 YGVGEYHNNS IIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PLDQNHAKDN FEEAEVWTVC 180 RIFKRDVTCR KHALDWQNKK KNNNNKNNDN NININWNMQN ISAISRTCST EESENSLEFL 240 GEKEIENFPG KLNQFSFTSD HHHHHHQGTS QVLSFSNPNN GDGLFFGQQQ WNDEFKPVVD 300 YNFGDSLLYS DW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	26	191	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	26	191	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	26	191	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	26	191	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	26	191	20	174	NAC domain-containing protein 19
3swm_B	2e-47	26	191	20	174	NAC domain-containing protein 19
3swm_C	2e-47	26	191	20	174	NAC domain-containing protein 19
3swm_D	2e-47	26	191	20	174	NAC domain-containing protein 19
3swp_A	2e-47	26	191	20	174	NAC domain-containing protein 19
3swp_B	2e-47	26	191	20	174	NAC domain-containing protein 19
3swp_C	2e-47	26	191	20	174	NAC domain-containing protein 19
3swp_D	2e-47	26	191	20	174	NAC domain-containing protein 19
4dul_A	2e-47	26	191	17	171	NAC domain-containing protein 19
4dul_B	2e-47	26	191	17	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452555.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
Swissprot	Q9SK55	9e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0D2RCM9	0.0	A0A0D2RCM9_GOSRA; Uncharacterized protein
STRING	Gorai.010G236700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-78	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Gorai.010G236700.1
Entrez Gene	105774569

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]