PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G222700.1

Common Name

B456_010G222700, LOC105771608

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 263aa MW: 28599.4 Da PI: 6.9996

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G222700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Gorai.010G222700.1 80 FSCNYCQRKFYSSQALGGHQNAH 102 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.84E-6	76	107	No hit	No description
PROSITE profile	PS50157	11.427	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEPPRSSEPS LSETSTVNSV SNGLKDDDNY DLVLDLSLSN KDDSKPELNL IECFKVTVSS 60 DDHQDCLGTP QGNETEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTLAK RGQQRVVVGV 120 GGDGDGGSGG GASFAAFGHP NTHSGRYSTM ASLPLHGSFN KSLGIQVHSM IHKPSFPSST 180 HIYGHNEWSR RPIHQTPAIG HLSMENFHVG SSTSNGTAAR FESSVRKFGP STEGMNGYWW 240 DSSVNPFNTK QDELKLDLSL KL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615065	1e-178	JX615065.1 Gossypium hirsutum clone NBRI_GE58868 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448495.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A0D2SXD2	0.0	A0A0D2SXD2_GOSRA; Uncharacterized protein
STRING	Gorai.010G222700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-39	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.010G222700.1
Entrez Gene	105771608

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]