PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 167aa MW: 18894.7 Da PI: 8.2963

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G202400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00099	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ F++ L H +H Gorai.010G202400.1 44 FKCKTCNRQFTSFQALGGHRASH 66 89**********99999998887 PP
2	zf-C2H2	11	0.0014	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Gorai.010G202400.1 90 HECSICGLEFSIGQALGGHMRRH 112 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.98E-9	42	112	No hit	No description
Pfam	PF13912	4.4E-12	43	68	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.325	44	71	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	44	66	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-10	90	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.224	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MKRSFSNREE ENNFALANYL ILLSQGRNMY ESTTNDSNLT CRVFKCKTCN RQFTSFQALG 60 GHRASHKKPK LMERDGGVLE NQPPAKPKMH ECSICGLEFS IGQALGGHMR RHRANLSEEN 120 HQEPLMSPLV KKANKVWCLD LNLTPFENDL ELLKLAEPTL AIDCFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449034.1	1e-122	PREDICTED: zinc finger protein ZAT11-like
TrEMBL	A0A0D2VCW4	1e-120	A0A0D2VCW4_GOSRA; Uncharacterized protein
STRING	Gorai.010G202400.1	1e-121	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	4e-37	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G202400.1
Entrez Gene	105772278

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]