PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G201000.1
Common NameB456_010G201000, LOC105773596
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 721aa    MW: 81302 Da    PI: 5.7074
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G201000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.81.5e-1193467161373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+av+++d + a++lL+++++++sp gd mqRla+yf+ +L+arla+s+++ y+ + +++ts    ++ l+a++lf  ++P+ 
  Gorai.010G201000.1 346 LRTLLTLCAQAVATDDRRSANELLKQIRQHSSPMGDGMQRLAHYFVDGLEARLAGSGTQSYNPVVTRPTS---AANILKAYHLFLAACPFR 433
                         5789*********************************************************999999999...999*************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s++    +I++ +e++ r+HiiDf+i +G+QWp+L++ L+sRp+gpp+l+iTg++ p++g   +e++eetg+rLa++Ae+++vpfef++
  Gorai.010G201000.1 434 KLSNFFSDTTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLKITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFDA 524
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a++++++++e++++++gE+l+Vn++++l +llde+v +es+r++vL+l+++l P+v+++   +  ++++ F +rf eal +ys+lfd+l
  Gorai.010G201000.1 525 -IAQKWDTIQIEDIKIESGEVLIVNCIYRLRNLLDETVVVESPRNKVLNLMRKLHPDVFILGIVNGAYSAPFFITRFREALFHYSTLFDML 614
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+++pre  er+ +Ere++g+e++nv+acegaer+er et+++W+ r ++aGF+++pl+++++k+ak  +++ + + + ++e++++l++gW
  Gorai.010G201000.1 615 ETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQVRNTRAGFRQLPLDKEMMKTAKERVNTNYHKDFVIDEDNHWLLQGW 705
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r +++ S+W
  Gorai.010G201000.1 706 KGRIVYAHSCW 716
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.26320697IPR005202Transcription factor GRAS
PfamPF035145.2E-117346716IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDPSLQGLYS SVDRFRVNDD TLLAISSQNF NNGFKNETFA GIPPLQPATI PINLRPSASV  60
NEPEDYDFSD LVLKYISEML MEEDMEDKTC MFKESSAALQ AAEKSFYEVL GEQYPPSLEP  120
ELKYQNHESS NELHGHSCCS CSSADGNLLN LPSNYDLGMQ MSLNYSSQAN SSHSSGNSAG  180
SLVDGFTDSP VSTPRLPEIF GDSESVIQFR KGFEEASRFL PNRGNLFVDV ESDGLFLKEV  240
KEEAKSVVEK VENELLQDGS RGKKKPYPED VNLYNGRSNK QSLVYTESTV SPEMFDTVLL  300
NCQSVADLQK VLQHETNKNV QQNGQSKGPT GGKARAKKGK RNVVDLRTLL TLCAQAVATD  360
DRRSANELLK QIRQHSSPMG DGMQRLAHYF VDGLEARLAG SGTQSYNPVV TRPTSAANIL  420
KAYHLFLAAC PFRKLSNFFS DTTIMNLAEN AARLHIIDFG ILYGFQWPCL IRRLSSRPGG  480
PPKLKITGID LPQPGFRPAE RVEETGRRLA NYAETFKVPF EFDAIAQKWD TIQIEDIKIE  540
SGEVLIVNCI YRLRNLLDET VVVESPRNKV LNLMRKLHPD VFILGIVNGA YSAPFFITRF  600
REALFHYSTL FDMLETNVPR EIPERMLIER EIFGWEAMNV IACEGAERIE RPETYKQWQV  660
RNTRAGFRQL PLDKEMMKTA KERVNTNYHK DFVIDEDNHW LLQGWKGRIV YAHSCWVPVS  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5035372026382Protein SCARECROW
5b3h_A6e-5035372025381Protein SCARECROW
5b3h_D6e-5035372025381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774840.0JX577484.1 Gossypium hirsutum clone NBRI_GE9321 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451059.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_012451060.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_012451061.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0D2VCU60.0A0A0D2VCU6_GOSRA; Uncharacterized protein
STRINGGorai.010G201000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]