PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G197800.1
Common NameB456_010G197800, LOC105773571
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-X1
Protein Properties Length: 882aa    MW: 98531.2 Da    PI: 8.4348
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G197800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05195213120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG H C  lCH+GpCp+Cp+
  Gorai.010G197800.1 195 CG-HFCLLLCHPGPCPSCPK 213
                         **.***************96 PP
2zf-NF-X116.71.6e-05247265119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         C kH C+++CH+G CppC+
  Gorai.010G197800.1 247 CNKHNCSEICHPGTCPPCR 265
                         779***************8 PP
3zf-NF-X1186.1e-06407426120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+H C++ C+ G+CppC++
  Gorai.010G197800.1 407 CGRHACKRRCCDGDCPPCSE 426
                         ******************85 PP
4zf-NF-X116.12.5e-05436452319
            zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                         +HkC ++CH+G C pCp
  Gorai.010G197800.1 436 NHKCPAPCHRGACAPCP 452
                         7***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.85E-577154No hitNo description
PROSITE patternPS01359082148IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.03E-5183231No hitNo description
SMARTSM004380.0049195213IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029195212IPR000967Zinc finger, NF-X1-type
CDDcd060086.17E-8237285No hitNo description
SMARTSM004380.0022247266IPR000967Zinc finger, NF-X1-type
PfamPF014220.0061247265IPR000967Zinc finger, NF-X1-type
CDDcd060081.64E-8290337No hitNo description
SMARTSM004380.0016300319IPR000967Zinc finger, NF-X1-type
PfamPF014220.22300318IPR000967Zinc finger, NF-X1-type
CDDcd060085.11E-9344393No hitNo description
SMARTSM004380.95354374IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029354373IPR000967Zinc finger, NF-X1-type
CDDcd060082.86E-8397445No hitNo description
SMARTSM004380.0092407426IPR000967Zinc finger, NF-X1-type
PfamPF014228.5E-4407425IPR000967Zinc finger, NF-X1-type
CDDcd060081.30E-10424472No hitNo description
SMARTSM004380.012434453IPR000967Zinc finger, NF-X1-type
PfamPF014220.011434452IPR000967Zinc finger, NF-X1-type
SMARTSM0043839491512IPR000967Zinc finger, NF-X1-type
PfamPF0142213501511IPR000967Zinc finger, NF-X1-type
PfamPF0142240520529IPR000967Zinc finger, NF-X1-type
SMARTSM0043812602632IPR000967Zinc finger, NF-X1-type
PfamPF014220.13602613IPR000967Zinc finger, NF-X1-type
CDDcd060081.79E-4633674No hitNo description
SMARTSM004380.014645663IPR000967Zinc finger, NF-X1-type
PfamPF014220.16645662IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6708729IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MNTTANYHPP PSSQPPFSDS DLDSDSDSEN FQVGSDLSNS IFKTYLEFSS SSSSSSSSSI  60
TAVDLSKIQS FLTSSSSGAL SCLICLERIR PSDPTWSCSS LCFALFHLLC IQSWARQSSD  120
LSAARAAARL PITAETAAKQ ASWNCPKCRS SYSKSEIPRC YLCFCGKLRD PPSDNPWILP  180
HSCGEICNRP LPNNCGHFCL LLCHPGPCPS CPKSVKARCF CGSVEDFRRC GFKNFSCNKL  240
CKKRLDCNKH NCSEICHPGT CPPCRARETY RCRCGKKEEE KDCCDRDYRC ENECKKLLNC  300
GKHVCERGCH GGDCGECPLQ GNRTCPCGKR IYEGMPCDGV APVCGATCNK LLNCGFHRCP  360
ERCHKGPCVE TCRTMVKKAC RCGGLKKEVP CYQDLSCERK CLRMRDCGRH ACKRRCCDGD  420
CPPCSEVCDK RLRCKNHKCP APCHRGACAP CPIMVTISCA CGETHFEVPC GTEMDHKPPK  480
CRKLCKITPL CRHASTSKPH RCHYGACPAC RAPCEEEYPC GHKCNLRCHG PRPPPNPEFT  540
LKPKKKKSNH QTECTPGTPC PPCPELVWRP CVGEHFGAER MMVCSNTTRF SCDNLCGNLL  600
PCGNHYCTKT CHPLETQPSS SGHQKRSESC EVCNLPCQKV RMPKCSHPCP LPCHPGECPP  660
CKVLMKRSCH CGAMVHAFEC IHYNNLSEKD QVAARSCGGP CHRKLPNCKH LCPEICHVDK  720
CPAPDKCSKK VTVRCKCQTL KKEWICQDVQ AAYRDTGNDP KDIPKNQFGL GLLPCNSDCK  780
RKIQEVESAL QLRKPKVLEK KEPENEKHGP KRRKRRDRIQ EGKQVSRFQE FVATMKRLLL  840
FIIIVAALIA VTYYSYKGLL QLSDWMNEVE LQRAKRRRSR F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1809815PKRRKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161041e-180JX616104.1 Gossypium hirsutum clone NBRI_GE60511 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451027.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D2RAU30.0A0A0D2RAU3_GOSRA; Uncharacterized protein
STRINGGorai.010G197800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]