PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G191800.2

Common Name

B456_010G191800, LOC105774248

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 429aa MW: 47331.9 Da PI: 5.5219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G191800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.5e-14	223	270	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Gorai.010G191800.2 223 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 270 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-15	221	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.81E-12	222	270	No hit	No description
Pfam	PF00010	3.2E-12	224	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	224	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNNNSHLIPY LTQDLPYDQS HWESFNVVPS STSPEAAAAA AAAGAYTPTP 120 DLLGLFHLPR CSFLPNPSIS FETTPGSPSV VYDPLFHLNL PPQPPVFREL LQSLPHGYTV 180 PADDKDAAGI GGLYHDGDNG IIQFTRDISM AGRAKDRDKA GKTTKHFATE RERRVHLNDK 240 YQALRTMVPS PTKNDRASIV GDAIDYIKEL LGTVRELQLL VDKKRCGQDR SKRLKTEDAA 300 SAADAGDVEF KSLGDPDQCY NTSLRSSWLQ RKSKDSEVDV RIVDDEVTIK LVQRKKINCL 360 LFVSRLLDEL QLDLLHVAGG NIGDYYSFLF NTKIYEGSSV YACAIANKLI DVVDRQYAAA 420 PPTSSTSL*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNNNSHLIPY LTQDLPYDQS HWESFNVVPS STSPEAAAAA AAAGAYTPTP  120
DLLGLFHLPR CSFLPNPSIS FETTPGSPSV VYDPLFHLNL PPQPPVFREL LQSLPHGYTV  180
PADDKDAAGI GGLYHDGDNG IIQFTRDISM AGRAKDRDKA GKTTKHFATE RERRVHLNDK  240
YQALRTMVPS PTKNDRASIV GDAIDYIKEL LGTVRELQLL VDKKRCGQDR SKRLKTEDAA  300
SAADAGDVEF KSLGDPDQCY NTSLRSSWLQ RKSKDSEVDV RIVDDEVTIK LVQRKKINCL  360
LFVSRLLDEL QLDLLHVAGG NIGDYYSFLF NTKIYEGSSV YACAIANKLI DVVDRQYAAA  420
PPTSSTSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452121.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A0D2UFE9	0.0	A0A0D2UFE9_GOSRA; Uncharacterized protein
STRING	Gorai.010G191800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-98	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G191800.2
Entrez Gene	105774248

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]