PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G191800.1 | ||||||||
Common Name | B456_010G191800, LOC105774248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 429aa MW: 47331.9 Da PI: 5.5219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.5e-14 | 223 | 270 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Gorai.010G191800.1 223 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 270 579**************************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-15 | 221 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.81E-12 | 222 | 270 | No hit | No description |
Pfam | PF00010 | 3.2E-12 | 224 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 224 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNNNSHLIPY LTQDLPYDQS HWESFNVVPS STSPEAAAAA AAAGAYTPTP 120 DLLGLFHLPR CSFLPNPSIS FETTPGSPSV VYDPLFHLNL PPQPPVFREL LQSLPHGYTV 180 PADDKDAAGI GGLYHDGDNG IIQFTRDISM AGRAKDRDKA GKTTKHFATE RERRVHLNDK 240 YQALRTMVPS PTKNDRASIV GDAIDYIKEL LGTVRELQLL VDKKRCGQDR SKRLKTEDAA 300 SAADAGDVEF KSLGDPDQCY NTSLRSSWLQ RKSKDSEVDV RIVDDEVTIK LVQRKKINCL 360 LFVSRLLDEL QLDLLHVAGG NIGDYYSFLF NTKIYEGSSV YACAIANKLI DVVDRQYAAA 420 PPTSSTSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452121.1 | 0.0 | PREDICTED: transcription factor bHLH91-like | ||||
TrEMBL | A0A0D2UFE9 | 0.0 | A0A0D2UFE9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G191800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-98 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G191800.1 |
Entrez Gene | 105774248 |
Publications ? help Back to Top | |||
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