PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Gorai.010G171500.3

Common Name

B456_010G171500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 339aa MW: 37969.9 Da PI: 8.5764

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G171500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.9	1.1e-17	19	110	2	86
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt +e+++Liea++ ++er rgk + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ + + + Gorai.010G171500.3 19 WTVSETMVLIEAKKMDDERRMkkswegegRGKPTELRWKWVEDYCWRRGCLRSQNQCNDKWDNLMRDYKKVREYQRR-TAGAEDNQGSYWE 108 ************66666552222222246799***************************************98.5777778888888 PP trihelix 85 le 86 +e Gorai.010G171500.3 109 ME 110 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.062	11	83	IPR017877	Myb-like domain
Pfam	PF13837	7.5E-13	18	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MADQGGNNIG MREYRKGNWT VSETMVLIEA KKMDDERRMK KSWEGEGRGK PTELRWKWVE 60 DYCWRRGCLR SQNQCNDKWD NLMRDYKKVR EYQRRTAGAE DNQGSYWEME KNERKEKNLP 120 TNMLRQIYEC LEEVVEKKGG QRVVLPATAT ASGSLPIPNI PDVMDRPIAS VQLPPILQHQ 180 LPPIPAAVPL PLTALPQLPQ PAAAPTPLLQ PPFSYAQPLP TVDSDTSEYS DSLAKRRRRS 240 GGNWEGTSSG AATANNSNEA GTAISKSASI IAEAIQASEE NEERRHRDLV SLHERILKIE 300 ESKTEINKRG IDGLVDAINK LANSILAFAS HKNQSAPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452807.1	0.0	PREDICTED: uncharacterized protein LOC105774776
TrEMBL	A0A0D2VBL5	0.0	A0A0D2VBL5_GOSRA; Uncharacterized protein
STRING	Gorai.010G171500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-75	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G171500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]