PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G156500.1
Common NameB456_010G156500, LOC105772345
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 268aa    MW: 30064.7 Da    PI: 5.1232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G156500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-20121171255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd      k  r++lg+f taeeAa a+++a+++++g
  Gorai.010G156500.1 121 HYRGVRRRP-WGKYAAEIRDS---SrKGSRVWLGTFETAEEAAMAYDKAALRIRG 171
                         7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-32120180IPR001471AP2/ERF domain
CDDcd000182.82E-29121179No hitNo description
PROSITE profilePS5103224.039121179IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-24121181IPR016177DNA-binding domain
PfamPF008472.3E-14121171IPR001471AP2/ERF domain
SMARTSM003801.0E-37121185IPR001471AP2/ERF domain
PRINTSPR003672.4E-11122133IPR001471AP2/ERF domain
PRINTSPR003672.4E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAIESSGHAT SDPSILENVW ANFIGGEEAG KTSTRNEVES TSKSWVELPS LDGREGLRRL  60
PSLGRWISMG ADAWDDLLHG IIPFGELNQS FNGETSKDIS PPRGFKVTNN CMRAEKVTTR  120
HYRGVRRRPW GKYAAEIRDS SRKGSRVWLG TFETAEEAAM AYDKAALRIR GPKAYLNFPL  180
EIVSKAMGID DTKTDINSGT CQYKDRACTG FKRECRDWDQ NSEYVMIEEP KLKRMATVEQ  240
VMEDGYGDVF EFQDLGSDYL ESLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-28120184468ATERF1
3gcc_A3e-28120184468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449083.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
RefseqXP_016681524.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0D2VAV10.0A0A0D2VAV1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IZZ10.0A0A1U8IZZ1_GOSHI; ethylene-responsive transcription factor ERF091-like
TrEMBLA0A2P5SKC70.0A0A2P5SKC7_GOSBA; Uncharacterized protein
STRINGGorai.010G156500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-40ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]