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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G133100.1 | ||||||||
Common Name | B456_010G133100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19024.8 Da PI: 7.0757 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.2 | 6.6e-16 | 29 | 73 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ien r + fskRr+gi KK +ELS+LC+ e++ ii+s+ gk Gorai.010G133100.1 29 KIIENVDDRLIAFSKRRTGIYKKISELSTLCGGEILFIILSPAGK 73 569****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-20 | 21 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.208 | 21 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-21 | 22 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-14 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-17 | 31 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-14 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-14 | 58 | 79 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MNFIQEEFHS KPSERLTRKL KERKKIEIKI IENVDDRLIA FSKRRTGIYK KISELSTLCG 60 GEILFIILSP AGKPYSVGHP SVESVAKHFS NASQHLEETT DAPVGTYQIR HGSKDPIDQL 120 NLKELYEQDE RFTEFNNLIS IMGNKKIAAI SSMQAPMDED VPFFLSP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448706.1 | 5e-76 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0D2SS24 | 1e-119 | A0A0D2SS24_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G133100.1 | 1e-120 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 3e-20 | AGAMOUS-like 64 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G133100.1 |
Publications ? help Back to Top | |||
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