PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G131500.1
Common NameB456_010G131500, LOC105774572
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 416aa    MW: 44514.8 Da    PI: 7.2511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G131500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20193242255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Gorai.010G131500.1 193 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 242
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.712193250IPR001471AP2/ERF domain
PfamPF008473.6E-14193242IPR001471AP2/ERF domain
SMARTSM003803.0E-37193256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-33193251IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22193251IPR016177DNA-binding domain
PRINTSPR003671.1E-11194205IPR001471AP2/ERF domain
CDDcd000181.40E-14201252No hitNo description
PRINTSPR003671.1E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MCLLNKVAHQ RGSGEYVRFP PAGYGGAEEQ QDGYSHQIQS QQNQPMMMQQ YGNRAQATQM  60
SGLTHGVSGQ RAAAYGANLA GMASSSFGYS GSASAAPPSP SPSASPSGSG SGSGSGSGLW  120
IGQKRGREEE VTAQFIESLP RVQRNFAGFR GSIADSSCGA TTVAEETAST VAPPTTSTET  180
STAAYEETAE RRRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEAAA RAYDEAALRF  240
RGNRAKLNFP ENVRLVPQQM QNFPATQTSV SSSLTTHFPA SGSTSMPTYY DSLPLQSSAN  300
DMLRDYWQYS QLLQNSGDLH GQQATSLVDQ MIQYSQFANI QQPMVSSSFP SLPPSFAASG  360
SSSSSSSSSA SFPLLFAEQQ QMSIFRQPSD RTQASESDFP VPPWSHPSHC PSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22192253163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153201e-166JX615320.1 Gossypium hirsutum clone NBRI_GE59244 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452560.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A0D2SS100.0A0A0D2SS10_GOSRA; Uncharacterized protein
STRINGGorai.010G131500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-24ethylene response factor 110
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]