PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G127900.1
Common NameB456_010G127900, LOC105774421
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 608aa    MW: 67886.5 Da    PI: 10.0882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G127900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.5e-101143336
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                        +W t E++llv+av+++G+++W++Ia++++ +R 
  Gorai.010G127900.1 11 PWGTLEELLLVCAVNRHGTKSWDSIASELQ-NRR 43
                        7*****************************.875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.377465IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-6766IPR009057Homeodomain-like
SMARTSM007174.9E-6867IPR001005SANT/Myb domain
SuperFamilySSF466894.91E-61067IPR009057Homeodomain-like
PfamPF002491.0E-81142IPR001005SANT/Myb domain
CDDcd001675.20E-61165No hitNo description
SMARTSM002974.6E-9271380IPR001487Bromodomain
PfamPF004391.7E-6306364IPR001487Bromodomain
SuperFamilySSF473701.44E-13306383IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.3E-12308394IPR001487Bromodomain
CDDcd043695.50E-12310375No hitNo description
PROSITE profilePS5001410.401310361IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAGENKSSAR PWGTLEELLL VCAVNRHGTK SWDSIASELQ NRRLTSSFLP SFTPQLCKDK  60
FFDLKRRFIS TNGASSSSSL VDQLRRIRVE ELRREVQERD VSIVSLELKV KRLEEERERS  120
SKEETDLDDR QNILSPDTVA GTPAGGDGSG DLDDRSFNES NSTSQKPELT TSATIIVKDE  180
QNNAGEVVGE RNAQVITEPI EPRGENEIDP VRTGEGPVNE RLNGEEHDNK KQVSDVQSSA  240
SLSKKKRCNG SSKGGSSSRE EREGDEVSPA MKRAPAVKPE SMVRLLGIIR SNRLGSALDR  300
RQRSQESARY KNLIRQHMDL QRIQTRLDKG VYSECSTKFL RDLLLLFNNL IVFHHKSSPE  360
RIAAQQLRAL VLKEMTHMLP KQSETDDVAK PNKSSTIVAC GKRRFSKAVT KNTSTSTRRG  420
DEKERGVEEK KVDGSCPIAT DDMGIRKKRS KERVVSGRRN SLRTSSTSEE TKHEYGGNEL  480
SSHDALEMKV DIKKENNNHN NNNKARKKQG AASFLKRMKQ NSPSEVTEKD EDDDEDDDSE  540
DHSKDEKEKG RVERVTRSSG GRGARAKRGV GRPPKVVAES TGKRGRENVE NEVGLGGTGR  600
ARKRGRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452362.10.0PREDICTED: uncharacterized protein LOC105774421
TrEMBLA0A0D2R7250.0A0A0D2R725_GOSRA; Uncharacterized protein
STRINGGorai.010G127900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1708978
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.14e-17DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]