PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G112200.3

Common Name

B456_010G112200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 448aa MW: 47719.7 Da PI: 9.6064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G112200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.2	4.5e-06	269	295	5	31
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 h+++Er RR ri +++ L+el+P+a Gorai.010G112200.3 269 HSIAERLRRVRIAERMKALQELVPNAN 295 99***********************74 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.34E-6	262	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.30E-4	262	303	No hit	No description
PROSITE profile	PS50888	9.235	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-6	266	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT 60 QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET 120 GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG 180 RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS 240 GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKVLSM 300 SRLGGAAAVA PLVSEGGGDC IQTSANGGSH PRNSNGDQTP SANDRLTMTE HQVAKLMEED 360 MGSAMQYLQE KGLCLMPISL ATAISSATSR SRNPMINHEN PTNGSHLLIQ SSGGDGPSSP 420 SMSVLTVQSA TMGNGGLEGG AASVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT  60
QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET  120
GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG  180
RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS  240
GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKVLSM  300
SRLGGAAAVA PLVSEGGGDC IQTSANGGSH PRNSNGDQTP SANDRLTMTE HQVAKLMEED  360
MGSAMQYLQE KGLCLMPISL ATAISSATSR SRNPMINHEN PTNGSHLLIQ SSGGDGPSSP  420
SMSVLTVQSA TMGNGGLEGG AASVSKP*

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF836432	0.0	KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683128.1	0.0	PREDICTED: transcription factor bHLH66-like isoform X2
Swissprot	Q9ZUG9	3e-59	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D2R600	0.0	A0A0D2R600_GOSRA; Uncharacterized protein
STRING	Gorai.010G112200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-49	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Gorai.010G112200.3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]