PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G106600.1
Common NameB456_010G106600, LOC105774594
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 261aa    MW: 28252.4 Da    PI: 4.9648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G106600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1860110155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Gorai.010G106600.1  60 TVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 110
                         57*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1360110IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2161119IPR016177DNA-binding domain
PROSITE profilePS5103223.4261118IPR001471AP2/ERF domain
SMARTSM003803.3E-3661124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-3261119IPR001471AP2/ERF domain
CDDcd000182.12E-3262120No hitNo description
PRINTSPR003672.8E-106273IPR001471AP2/ERF domain
PRINTSPR003672.8E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAELQHSETE SSSNSTSSPP LSPSNSTPNS TTTTPNHKPE TFTSGSTKKP KTMRDSSKRT  60
VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG NSAILNFPEL  120
ADSLPRPVSL APRDVQAAAA KAAQMDKFDS PSSSSSSSSS TSMSTSTLSS SSSVSSLVSH  180
MELSSGPDEL SEIVELPSLG TSYDSVESKN EFVFMDSVDG WLYPPPLLQN MEDCGYVCDQ  240
LVVPESILQN GFEQGLLWDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18621181572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801910.0KP780191.1 Gossypium hirsutum C-repeat binding factor 8 (CBF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452589.10.0PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-72DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2V8H00.0A0A0D2V8H0_GOSRA; Uncharacterized protein
STRINGGorai.010G106600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]