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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G099600.1 | ||||||||
Common Name | B456_010G099600, LOC105773562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 505aa MW: 55047.6 Da PI: 9.0599 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.5e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Gorai.010G099600.1 70 FMCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Gorai.010G099600.1 147 WKCEKCSKTYAVQSDWKAHSKIC 169 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.31E-7 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.4E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.031 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.31E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 110 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MDESMSNLTS TSGEFSASSG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS 60 PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV 120 HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITGPA QQVPGGSSVS HMNNLQSQLH SHDFHGLSVK 240 REEHPFNARP TTEDSLNPPW PGPPSINLLD HPLSQNENPS QNTGSNTLLP PFQTQTASPH 300 MSATALLQKA AQMGVTMSQP LQSPVAAMAS MQRPYMSGGT SGSTSFALST AGSGLGLFPR 360 EDLGSGSPHG LASLGNKAAA AITSRFMEQS PTAAPNSLLH DMMCSLSTGF DGSSLFEQSF 420 NRVWNTKGNP IDFQEPTTDH LSKAKESHSQ GNNMGGNDGM TRDFLGLKAF PHRDFPNLAA 480 LNHRLNPSSR FGQQNQHSQT PWQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 109 | KLKQRTNKEVVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451019.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-116 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A0D2U9N2 | 0.0 | A0A0D2U9N2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G099600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-119 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G099600.1 |
Entrez Gene | 105773562 |
Publications ? help Back to Top | |||
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