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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.010G079900.1 |
| Common Name | B456_010G079900, LOC105771490 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
MYB |
| Protein Properties |
Length: 264aa MW: 29087.3 Da PI: 5.3269 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.010G079900.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W+++Ed+ l ++ +++G+g +W + +r+ g++R++k+c++rw++yl
Gorai.010G079900.1 14 RGPWSPDEDDTLRNYLAKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
89*********************************************97 PP
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| 2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T eEd ++ + G++ W++Ia+ ++ gRt++++k++w++
Gorai.010G079900.1 69 GGFTDEEDNIICSLYSSIGSR-WSLIAAQLP-GRTDNDIKNHWNT 111
569******************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKRGPWSPD EDDTLRNYLA KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60
YLRPDIKHGG FTDEEDNIIC SLYSSIGSRW SLIAAQLPGR TDNDIKNHWN TKLKKKLFAA 120
KTGVDQNSNN HESTITDSST TSVPIEAEAL VNGSTTTTTS SSYMINMKYQ QNYDYPGLVL 180
DQIDQFTLPG LMEYSITSTA NDNYSMSSSS QEVSILCNSS SFAPENNSTA WFIDGGAEDQ 240
GILLDQLDFE GPHYLFTASG QQI*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
