PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G051900.1 | ||||||||
Common Name | B456_010G051900, LOC105773442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33896.2 Da PI: 6.5148 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.5 | 1.1e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+ Gorai.010G051900.1 8 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKP 97 79*************************999.88***************65556799*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + vg+kk Lvfy g+apkgekt+W+mheyrl Gorai.010G051900.1 98 IGQ--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 *98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-63 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.701 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MTASELQLPP GFRFHPTDEE LVMHYLCRKC ASQSIAVPII AEIDLYKYDP WDLPDLALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGQ PKPVGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KKNSLRLDDW VLCRIYNKKG AIEKQPPQGS IGKSSAVTEI 180 EDKKPDIATL GVDTRQLPPP PTGLVNDYVY FDTSESVPRL HTDSSCSEHV VSPEFTCEVQ 240 SEPQWKDWGS ATNTTTTNAL DFPYNYMDAT VDNGFPAHFQ NNNQLSPLQD MFMYLQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-82 | 4 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2413 | 0.0 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48744822 | 0.0 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU706339 | 0.0 | EU706339.1 Gossypium hirsutum NAC domain protein NAC2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450815.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-158 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0D2U9F0 | 0.0 | A0A0D2U9F0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G051900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-160 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G051900.1 |
Entrez Gene | 105773442 |