PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G031800.1 | ||||||||
Common Name | B456_010G031800, LOC105773833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 37630.4 Da PI: 4.4106 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8e-11 | 165 | 208 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y k+L Gorai.010G031800.1 165 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 208 589*********************66......**************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.95E-5 | 157 | 220 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-15 | 159 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 165 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-11 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 166 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.39E-4 | 257 | 298 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEINEESFLE ELLALRRENW DTVPTQMNEV FSNGWNFDCF DDMNLSTSLF PTTFCHEFST 60 ALPLEQDLGY FNGVYCPFGD EFSAPQLTDS SNNTFDTPPP FPNMLEEEES GFLADELNKL 120 DVQVPCKAEP FQSPEAPVFN NEAAACLDRK NRGKKMEGQQ PSKNLMAERR RRKRLNDRLS 180 MLRSIVPKIS KMDRTSILGD TIDYTKELLE RIKSLQQETE TDSNELNMAH IFKGGKSNEI 240 FVRNTPKFEV ERRDGETRIE ICCSGKPGLL LSTVTTLEAL GLEIQQCVIS CFNDFALQAS 300 CSQDLEQRTL ISCEDIKQAL FRNAGYGGRC L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 174 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451444.1 | 0.0 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 3e-78 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0D2SLV0 | 0.0 | A0A0D2SLV0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5RRT0 | 0.0 | A0A2P5RRT0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G031800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 9e-81 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G031800.1 |
Entrez Gene | 105773833 |