PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G028200.2 | ||||||||
Common Name | B456_010G028200, LOC105773737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 414aa MW: 45007.2 Da PI: 6.5721 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 254 | 302 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Gorai.010G028200.2 254 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 302 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-17 | 249 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.94E-11 | 249 | 306 | No hit | No description |
PROSITE profile | PS50888 | 15.586 | 251 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-17 | 252 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 254 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 257 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MASDGNEDLG FKHHSLMNTN NPLCDKVDGM ALSSMYNTKS SNSSDPFFGS GWDPIVSLNQ 60 SESLGGGSSM VSHSGFANSH YPLLMENQGI CGTSHFSQYQ SDPSFVELVP KIQGFGCGNL 120 SEMVGPMSLP HCTQGYAMNH EGGIERASTN STQSRDDRQI SEEGVVGASP NRKCRKRVHE 180 ANQNADEELK KDPSGESCDV QKEHDSKKQK TEQNATANSR GKQVVKQAKD SSQTGEAPKE 240 NYIHVRARRG QATNSHSLAE RVRREKISER MKLLQELVPG CNKITGKAVM LDEIINYVQS 300 LQQQVEFLSM KLATVNPELN IDLERILSKE ILHSRGGNAA VVGFNPGINL SHPFSSGIFP 360 GTISGIPNTN PQFPPFPPQT VLDNELQNLF QMGFDSSSAM DSLGPIGRLK PGL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451289.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
Refseq | XP_012451290.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
Refseq | XP_012451291.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
TrEMBL | A0A0D2V4R9 | 0.0 | A0A0D2V4R9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G028200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G028200.2 |
Entrez Gene | 105773737 |
Publications ? help Back to Top | |||
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