PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G028200.1
Common NameB456_010G028200, LOC105773737
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 414aa    MW: 45007.2 Da    PI: 6.5721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G028200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10254302355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Gorai.010G028200.1 254 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 302
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17249318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-11249306No hitNo description
PROSITE profilePS5088815.586251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7254302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MASDGNEDLG FKHHSLMNTN NPLCDKVDGM ALSSMYNTKS SNSSDPFFGS GWDPIVSLNQ  60
SESLGGGSSM VSHSGFANSH YPLLMENQGI CGTSHFSQYQ SDPSFVELVP KIQGFGCGNL  120
SEMVGPMSLP HCTQGYAMNH EGGIERASTN STQSRDDRQI SEEGVVGASP NRKCRKRVHE  180
ANQNADEELK KDPSGESCDV QKEHDSKKQK TEQNATANSR GKQVVKQAKD SSQTGEAPKE  240
NYIHVRARRG QATNSHSLAE RVRREKISER MKLLQELVPG CNKITGKAVM LDEIINYVQS  300
LQQQVEFLSM KLATVNPELN IDLERILSKE ILHSRGGNAA VVGFNPGINL SHPFSSGIFP  360
GTISGIPNTN PQFPPFPPQT VLDNELQNLF QMGFDSSSAM DSLGPIGRLK PGL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451289.10.0PREDICTED: transcription factor bHLH74
RefseqXP_012451290.10.0PREDICTED: transcription factor bHLH74
RefseqXP_012451291.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A0D2V4R90.0A0A0D2V4R9_GOSRA; Uncharacterized protein
STRINGGorai.010G028200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-90bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]