PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G025400.1
Common NameB456_010G025400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 250aa    MW: 27639.1 Da    PI: 8.3038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G025400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-101752151055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Gorai.010G025400.1 175 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 215
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14165231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.69E-12174219No hitNo description
PfamPF000108.2E-8175215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGGLSFINPE INEILLPSSN AFDYNSLATY DLTGSNHVAV TNDITMSFES FPPLFPNTPM  60
EGTVNNVIED LNTKKRLRVH THTRIYMYAI SKGCKNVQRS KKNRNEGECN NYIGVERGHS  120
SSTTCSSEDD SVCQDINNNG GGATSDTKAS QALNLNGKAR ASRGSATDPQ SLYARKRRER  180
INERLRILQN LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDLWMYA PIAYNGVDVA  240
LNKKISTLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449111.11e-172PREDICTED: transcription factor bHLH85
TrEMBLA0A0D2U7Q90.0A0A0D2U7Q9_GOSRA; Uncharacterized protein
STRINGGorai.010G025400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-47bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]