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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G020700.2 | ||||||||
Common Name | B456_010G020700, LOC105774501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 318aa MW: 36057.5 Da PI: 7.3305 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 79.8 | 4.4e-25 | 25 | 110 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SF gF+k+ ++ weF++++Fkkg+k+ Gorai.010G020700.2 25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSF-------GFRKIVPDR---------WEFANEYFKKGEKH 99 9**************************************************9.......9*****999.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i+r+k++ Gorai.010G020700.2 100 LLCEIHRRKTA 110 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-27 | 17 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-47 | 21 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.45E-25 | 22 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-21 | 25 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MALMLDNCEG ILLSLDSHKP VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFGFRK IVPDRWEFAN EYFKKGEKHL LCEIHRRKTA QPQVTAALNH 120 YNHHHRHLHP QSPMVNNTHY GYLPFPSRVS ISPPDSDEQT TNWCDSPPLS STTGGGGSYN 180 NSSVTALSED NERLRRSNNL LISELAHMKK LYNDIIYFVQ NHVKPVTPSN SYSPSLLLCA 240 PNQHHFGYYP NSPTPQVQVL NEEPNNNKTK LFGVPLQSKK RLHPEYGGST AANMETHKAR 300 LVLEKDDIGL NLMPSST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-15 | 21 | 110 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 8e-15 | 21 | 109 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 8e-15 | 21 | 109 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 8e-15 | 21 | 109 | 26 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067411 | 0.0 | KR067411.1 Gossypium hirsutum HSF30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452468.1 | 0.0 | PREDICTED: heat stress transcription factor B-4-like isoform X2 | ||||
Swissprot | Q9C635 | 1e-101 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A0D2U7I1 | 0.0 | A0A0D2U7I1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G020700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-102 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G020700.2 |
Entrez Gene | 105774501 |
Publications ? help Back to Top | |||
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