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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.010G020700.1 |
Common Name | B456_010G020700, LOC105774501 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HSF |
Protein Properties |
Length: 325aa MW: 36932.5 Da PI: 7.5378 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.010G020700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 115.7 | 2.9e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fkkg+k+
Gorai.010G020700.1 25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFKKGEKH 106
9*****************************************************************99.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i+r+k++
Gorai.010G020700.1 107 LLCEIHRRKTA 117
********986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKP VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEYF KKGEKHLLCE IHRRKTAQPQ 120 VTAALNHYNH HHRHLHPQSP MVNNTHYGYL PFPSRVSISP PDSDEQTTNW CDSPPLSSTT 180 GGGGSYNNSS VTALSEDNER LRRSNNLLIS ELAHMKKLYN DIIYFVQNHV KPVTPSNSYS 240 PSLLLCAPNQ HHFGYYPNSP TPQVQVLNEE PNNNKTKLFG VPLQSKKRLH PEYGGSTAAN 300 METHKARLVL EKDDIGLNLM PSST*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 6e-22 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 7e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 7e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 7e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |