PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G012000.2 | ||||||||
Common Name | B456_010G012000, LOC105773970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 40295.7 Da PI: 4.3812 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.5 | 1.5e-11 | 19 | 115 | 12 | 127 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 eel L+k ++g++l++ + ev+ y++eP+ Lp ++ w f ++++ n +++g Wk + + +ev+s ++ +g Gorai.010G012000.2 19 EELF-IGLNKLTSGSPLPC--NVIEVNPYSFEPEYLP------DDMW-FLTSSN--------DNTDMEHGLWKVKEEAREVFS-NSDIIGW 90 5555.34677777777777..4668899999999998......2334.443332........2345689**************.999**** PP NAM 103 kktLvfykgrapkgektdWvmheyr 127 ++tL++ykg+ ++ ++++Wvm+ ++ Gorai.010G012000.2 91 RTTLAYYKGQVSHERNSNWVMQVFS 115 *********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.436 | 8 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-17 | 17 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-5 | 32 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNASAASLSA CIAITSTNEE LFIGLNKLTS GSPLPCNVIE VNPYSFEPEY LPDDMWFLTS 60 SNDNTDMEHG LWKVKEEARE VFSNSDIIGW RTTLAYYKGQ VSHERNSNWV MQVFSATQKR 120 LCDENANKET ISMCRVFLVP SDEMQEKVSS ARIGTENHLP QPPILEANCG TGIGSSSNHQ 180 VNKHDEKEGL AIAGTIPVPE HQDENDVGMD CFTDAYIDSF SRGDFLEMND LVNHVSSSSS 240 GNSSAPSMSS DECFDSMAFL QDLDQDLVLE QNDMGKKLNV SASNRLDEVV LVPAALGSVV 300 SIEGNDSSSN ELLKTTSSVP NSANNNEISK HAMGNQRDEG PSSSSSVKPK SSRMKELRKK 360 YLCFMPF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527273 | 6e-94 | HQ527273.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IOGW8 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451674.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Refseq | XP_012451676.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Refseq | XP_012451677.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Refseq | XP_012451678.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Refseq | XP_012451679.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
TrEMBL | A0A0D2U726 | 0.0 | A0A0D2U726_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G012000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-11 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G012000.2 |
Entrez Gene | 105773970 |
Publications ? help Back to Top | |||
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