PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G012000.1
Common NameB456_010G012000, LOC105773970
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 368aa    MW: 40295.7 Da    PI: 4.3812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G012000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.51.5e-111911512127
                 NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                         eel    L+k ++g++l++   + ev+ y++eP+ Lp      ++ w f ++++         n  +++g Wk + + +ev+s ++  +g 
  Gorai.010G012000.1  19 EELF-IGLNKLTSGSPLPC--NVIEVNPYSFEPEYLP------DDMW-FLTSSN--------DNTDMEHGLWKVKEEAREVFS-NSDIIGW 90 
                         5555.34677777777777..4668899999999998......2334.443332........2345689**************.999**** PP

                 NAM 103 kktLvfykgrapkgektdWvmheyr 127
                         ++tL++ykg+ ++ ++++Wvm+ ++
  Gorai.010G012000.1  91 RTTLAYYKGQVSHERNSNWVMQVFS 115
                         *********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4368139IPR003441NAC domain
SuperFamilySSF1019417.98E-1717138IPR003441NAC domain
PfamPF023651.7E-532115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNASAASLSA CIAITSTNEE LFIGLNKLTS GSPLPCNVIE VNPYSFEPEY LPDDMWFLTS  60
SNDNTDMEHG LWKVKEEARE VFSNSDIIGW RTTLAYYKGQ VSHERNSNWV MQVFSATQKR  120
LCDENANKET ISMCRVFLVP SDEMQEKVSS ARIGTENHLP QPPILEANCG TGIGSSSNHQ  180
VNKHDEKEGL AIAGTIPVPE HQDENDVGMD CFTDAYIDSF SRGDFLEMND LVNHVSSSSS  240
GNSSAPSMSS DECFDSMAFL QDLDQDLVLE QNDMGKKLNV SASNRLDEVV LVPAALGSVV  300
SIEGNDSSSN ELLKTTSSVP NSANNNEISK HAMGNQRDEG PSSSSSVKPK SSRMKELRKK  360
YLCFMPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272736e-94HQ527273.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IOGW8 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451674.10.0PREDICTED: NAC domain-containing protein 17-like
RefseqXP_012451676.10.0PREDICTED: NAC domain-containing protein 17-like
RefseqXP_012451677.10.0PREDICTED: NAC domain-containing protein 17-like
RefseqXP_012451678.10.0PREDICTED: NAC domain-containing protein 17-like
RefseqXP_012451679.10.0PREDICTED: NAC domain-containing protein 17-like
TrEMBLA0A0D2U7260.0A0A0D2U726_GOSRA; Uncharacterized protein
STRINGGorai.010G012000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-11NAC domain containing protein 28
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]