PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G011200.1
Common NameB456_010G011200, LOC105774676
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 390aa    MW: 41422.8 Da    PI: 9.2101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G011200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-055678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Gorai.010G011200.1 56 FICEICNKGFQRDQNLQLHRRGH 78
                        89*******************88 PP
2zf-C2H2140.00015134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k++  ks+ + H++++
  Gorai.010G011200.1 134 WRCERCSKTYAVKSDWTAHLKSC 156
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-65578No hitNo description
Gene3DG3DSA:3.30.160.609.8E-65578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8455678IPR007087Zinc finger, C2H2
PfamPF121714.4E-55678IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0225678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035523099129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.62E-6129154No hitNo description
SMARTSM00355120134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAKFENSSSM AVSLIEAFQQ TDGVQSKKKR NLPGMPDPEA EVISLSPKSL LATNRFICEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTDG NETRKKRVYV CPETSCVHHN AARALGDLTG  120
IKKHYCRKHC EKKWRCERCS KTYAVKSDWT AHLKSCGTKE YKCNCGTVFS RRDSFYTHRA  180
FCDALAEENA RAQAATFSPP PLTQSTTTMV SPGLSTQSSE MLEIPMGLSP PDPPPPTTSI  240
SASNGDVLVT IFASTPPLET TSLSLSSPLY LSNNSSSSIF TAPSLQPAMS ATALLQKAAQ  300
MGAAATSSPS LLRGLSFAVP SSSSTTPSTG HKPTSTLDLL GLGICGGGGG GRGGTSNGLS  360
ALFTQFGGGF NGEPAATTSY GAPNSSSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-30131191464Zinc finger protein JACKDAW
5b3h_F7e-30131191464Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18295KLRQRTDGNETRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5244168e-32HQ524416.1 Gossypium herbaceum clone NBRI_F016 simple sequence repeat marker, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452690.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-121IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0D2U6Z20.0A0A0D2U6Z2_GOSRA; Uncharacterized protein
STRINGGorai.010G011200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3650822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]