PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G008200.1

Common Name

B456_010G008200, LOC105774407

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 343aa MW: 37905.3 Da PI: 9.3427

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G008200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00015	225	263	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L+ l+ + +K + a++L +A+ YIk Lq Gorai.010G008200.1 225 RKEKLGDRIAALQHLVAPF-----GKTDTASVLMEAIGYIKFLQ 263 67788899999999998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.211	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.04E-5	223	267	No hit	No description
SuperFamily	SSF47459	7.46E-11	223	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-9	227	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MESENVHHQH QLHHYNQLLV GSSSSSLPCY GVSSSPHSWP PTNTFNTSEF NHNGALLQPW 60 TNNEGTFNNP SQHKLMLKTV SSSFPMLSQS SEFYPNTHNL PPLPTKGSFS HIYPSINISN 120 LNQASSMEAF DLLSPSRLTK NSSFKHYASE DHHHNLASFG HSHQQFQLSN QRLACNNSPS 180 NISSSFNTET LEAKRSGNIL KEAKASTATK KSRLESRACP PFKVRKEKLG DRIAALQHLV 240 APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNR TSRSKHGGSM MEMGNEEETR 300 QDLKSRGLCL VPLSCMSYLT IDNGGGGSSG SFWPPPNFSR GF*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MESENVHHQH QLHHYNQLLV GSSSSSLPCY GVSSSPHSWP PTNTFNTSEF NHNGALLQPW  60
TNNEGTFNNP SQHKLMLKTV SSSFPMLSQS SEFYPNTHNL PPLPTKGSFS HIYPSINISN  120
LNQASSMEAF DLLSPSRLTK NSSFKHYASE DHHHNLASFG HSHQQFQLSN QRLACNNSPS  180
NISSSFNTET LEAKRSGNIL KEAKASTATK KSRLESRACP PFKVRKEKLG DRIAALQHLV  240
APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNR TSRSKHGGSM MEMGNEEETR  300
QDLKSRGLCL VPLSCMSYLT IDNGGGGSSG SFWPPPNFSR GF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452352.1	0.0	PREDICTED: transcription factor bHLH110 isoform X2
Swissprot	Q9SFZ3	8e-60	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A0D2U6R8	0.0	A0A0D2U6R8_GOSRA; Uncharacterized protein
STRING	Gorai.010G008200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G008200.1
Entrez Gene	105774407

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]