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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.010G006800.1 |
| Common Name | B456_010G006800, LOC105774344 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 306aa MW: 33726.5 Da PI: 8.1359 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.010G006800.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 225.7 | 8.9e-70 | 84 | 240 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsalss 88
r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla+++++++ + + +kr++e+ ++ +l++
Gorai.010G006800.1 84 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQEQQQF--RGEIPKRQKENqgggVVTAVPSLAC 172
67999***************************************************99777655..5666666666645666777788888 PP
DUF702 89 tklssaesk..keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
t+ls +++ + le ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+
Gorai.010G006800.1 173 TRLSPTTTAttSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 240
888766554015567778************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNRGFEIWPQ YYYQQPQQAN VVSSSTYPFG 60
TGPSRRTIAG GFNLSDESSS SRLRQGGINC QDCGNQAKKD CLHLRCRTCC KSRGFQCQTH 120
VKSTWVPAAK RRERQQQLAT LQEQQQFRGE IPKRQKENQG GGVVTAVPSL ACTRLSPTTT 180
ATTSGLELGQ FPPEVSSQAV FRCVKVSAMD DVDEEFAYQT AVNIAGHVFK GILYDQGPES 240
RYTGGGGGSR ENSQQQQQLN LMADMTTTAV ATSSNIGTNM LDPSVYPAPI NAFIAGTQFF 300
PHPRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX583895 | 1e-127 | JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence. |
