PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G446100.1
Common NameB456_009G446100, LOC105768519
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 509aa    MW: 56575.7 Da    PI: 6.3439
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G446100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.72.1e-1341375071374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+elL +cA+a++++d++l++ l+++l++++s +g+p qRl ay++e+L arla+s+s++yk+l+++e +   sse l+++++++e++P++
  Gorai.009G446100.1 137 LKELLCACAKAIENKDMHLTDCLMTQLRQMVSVSGEPKQRLGAYMLEGLVARLASSGSSIYKSLRCKEPA---SSELLSYMHILYEICPYF 224
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+ aLa+Rp+gpps+RiTg+++++s   +   le +++rL+k+Ae ++vpfef++
  Gorai.009G446100.1 225 KFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWLTLIPALAARPGGPPSIRITGIDDSTSAyaRGGGLEIVRQRLSKVAELCKVPFEFHA 315
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a + +d+++e+Lr++pgEa+aVn++++lh+++desv  +++rd++L+l kslsPkvv++veqea++n+++F+ rfle+++++  +f+s+
  Gorai.009G446100.1 316 -AAISATDVQFENLRIQPGEAVAVNFAMMLHHMPDESVGAQNHRDRLLRLAKSLSPKVVTLVEQEANTNTAPFVPRFLETMNHFLPIFESI 405
                         .8999************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+++eri+vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGFkp pls+++++++k+ll+ + +  y++++++g l+lgW
  Gorai.009G446100.1 406 DVSLPRDHKERINVEQHCLAREIVNIIACEGPERVERHELLGKWRSRFIMAGFKPFPLSSFVNSTIKSLLQSYCD-KYTLDDKDGVLLLGW 495
                         **************************************************************************5.5************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r++v+ +aWr
  Gorai.009G446100.1 496 MNRAIVASCAWR 507
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.525111488IPR005202Transcription factor GRAS
PfamPF035147.1E-132137507IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MQTSQNHKVT VQEMESNCWP PKLEQYCTLD SSSGVQNSSS TASFSPNGSP VSQPNNSCPM  60
DLRRSPDNTC SPVSNSCVTD NEHDLSHMIR QLETAMLGTD SDNIDVHAIM ASGRSTEVSI  120
ESERWKYMME MIAQGDLKEL LCACAKAIEN KDMHLTDCLM TQLRQMVSVS GEPKQRLGAY  180
MLEGLVARLA SSGSSIYKSL RCKEPASSEL LSYMHILYEI CPYFKFGYMS ANGAIAEAMK  240
DESRVHIIDF QIAQGSQWLT LIPALAARPG GPPSIRITGI DDSTSAYARG GGLEIVRQRL  300
SKVAELCKVP FEFHAAAISA TDVQFENLRI QPGEAVAVNF AMMLHHMPDE SVGAQNHRDR  360
LLRLAKSLSP KVVTLVEQEA NTNTAPFVPR FLETMNHFLP IFESIDVSLP RDHKERINVE  420
QHCLAREIVN IIACEGPERV ERHELLGKWR SRFIMAGFKP FPLSSFVNST IKSLLQSYCD  480
KYTLDDKDGV LLLGWMNRAI VASCAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-621415078375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443928.10.0PREDICTED: scarecrow-like protein 5
RefseqXP_012443929.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0D2U4T00.0A0A0D2U4T0_GOSRA; Uncharacterized protein
STRINGGorai.009G446100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]