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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G412900.1 | ||||||||
Common Name | B456_009G412900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 27533.8 Da PI: 7.1438 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Gorai.009G412900.1 170 HECSICGAEFSSGQALGGHMRRH 192 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.3E-10 | 100 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.28E-9 | 100 | 123 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.45 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.28E-9 | 165 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.9E-4 | 166 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.0E-13 | 169 | 193 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEGQQEVVLC KDELQIIKGK RTKRPRPVSS LTLAIASTTT TSTGGESRTS NDDSSITTAV 60 EPPESCWEDE ENMAYCLMLL AQGQTRKPSE PTGKTAGMNV HQCKTCNRCF PSFQALGGHR 120 ASHKKPKLHS EENTKRLKLV KEDDDMNTTL SLQITNKAPA LCNGTKSKVH ECSICGAEFS 180 SGQALGGHMR RHRTSTNATT TVGTSTSAET EDLSSNKPTT VLQLDLNLPA PEDDRHNESN 240 FPFTQTINLC YC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442995.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0D2U2Z5 | 0.0 | A0A0D2U2Z5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G412900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24980 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 6e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G412900.1 |
Publications ? help Back to Top | |||
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