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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.009G409600.1 |
Common Name | B456_009G409600, LOC105767813 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HD-ZIP |
Protein Properties |
Length: 227aa MW: 26472.3 Da PI: 9.4468 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.009G409600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.6 | 1.1e-18 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++t+eqle Le F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
Gorai.009G409600.1 63 KKKRLTNEQLEWLEMSFQEDIKLDPQRKMKLSRELGLQPRQIAVWFQNRRARWK 116
56679************************************************9 PP
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2 | HD-ZIP_I/II | 109 | 3.4e-35 | 62 | 154 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLglqprq+avWFqnrRAR+k+k+lE+ ++aL++++ +++e+++L++ev++L++ l
Gorai.009G409600.1 62 EKKKRLTNEQLEWLEMSFQEDIKLDPQRKMKLSRELGLQPRQIAVWFQNRRARWKAKELERLCHALQHHLHLVSKETQKLQHEVSKLKAML 152
69**************************************************************************************988 PP
HD-ZIP_I/II 92 ke 93
+e
Gorai.009G409600.1 153 RE 154
75 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MEWNGTLSFV PGQPPSLTSL YNYNYDQYSP GMEMMNVGLA EAEAMEKKKK KKKKKIYMNN 60 EEKKKRLTNE QLEWLEMSFQ EDIKLDPQRK MKLSRELGLQ PRQIAVWFQN RRARWKAKEL 120 ERLCHALQHH LHLVSKETQK LQHEVSKLKA MLREQATRNQ VSTGYTEISG EETIESTLIH 180 CSNKPMVVPN NHHPIADHCS YLFNVDKHNP NPVGSTYWGE QLPTNP*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 46 | 54 | KKKKKKKKK |
2 | 48 | 54 | KKKKKKK |
3 | 48 | 65 | KKKKKKKIYMNNEEKKKR |
4 | 51 | 65 | KKKKIYMNNEEKKKR |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX614786 | 1e-157 | JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence. |