PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 305aa MW: 33764.4 Da PI: 6.5082

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G399000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.1	1.6e-32	84	186	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ g ++ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++ Gorai.009G399000.1 84 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILFQRHRT 174 99*************************966777899*********************************************9888 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Gorai.009G399000.1 175 DGDRLFIGWRRR 186 9999****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.2E-42	78	188	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-30	81	185	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.69E-29	82	176	No hit	No description
Pfam	PF02362	1.8E-29	84	186	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.142	84	187	IPR003340	B3 DNA binding domain
SMART	SM01019	7.2E-26	84	187	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST 60 LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG 120 LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF 180 IGWRRRGAAV VVAPAATDGG NAMMENDSGG GGGGNGGWNN RGLYQRYPHL GHIQGDLEAN 240 VPYQPDCLHA GSIVQNQATA AGNPKRLVRL FGVNLECHQL DESPPSTPAS SMVSSQGPTA 300 HQFY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-50	79	186	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-50	79	186	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441607.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q9FNI3	4e-65	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	A0A0D2QVR1	0.0	A0A0D2QVR1_GOSRA; Uncharacterized protein
STRING	Gorai.009G399000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	3e-59	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G399000.1
Entrez Gene	105766627

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]