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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G396900.1 | ||||||||
Common Name | B456_009G396900, LOC105766599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 654aa MW: 71137.3 Da PI: 6.998 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 369 | 406 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Gorai.009G396900.1 369 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 406 554459******************************88 PP | |||||||
2 | BELL | 121.1 | 4.6e-39 | 230 | 301 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe+q+kkakL+++l+eV++rY+qy++q+q+v ssFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi Gorai.009G396900.1 230 EKQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVTSSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITDQI 301 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-63 | 148 | 299 | IPR006563 | POX domain |
Pfam | PF07526 | 2.5E-49 | 155 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 347 | 410 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 350 | 414 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.51E-12 | 350 | 411 | No hit | No description |
SuperFamily | SSF46689 | 8.55E-17 | 351 | 416 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-29 | 353 | 416 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 367 | 406 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MATYFHGNPE IQASTDGLQT LVLMNPAYVQ YSDTPPPPQA SNLLFFNPNS LSPPQTQQLV 60 GIPLPATSAA NQGPTSHDIS PLHGLVQRVH YNMYNPIDPS GSARETPRAQ QGLSLTLSSQ 120 QQPGYGSQAQ AVSGGSASSG SGVHNRVSGV QSVFLSSKYL KAAQELLDEV VNVNTTGITK 180 SELLAKKGGG GNNHSNSSSK AMGESSVVAG DGSGGGEAGE KHVAELTTAE KQEIQMKKAK 240 LINMLDEVEQ RYRQYHHQMQ IVTSSFEQAA GIGSAKTYTA LALKTISKQF RCLKDAITDQ 300 IRAANKSLGE EEDGVGEAAK IEGSRLKFVD HHLRQQRALQ QLGMIQHNAW RPQRGLPERS 360 VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEET 420 KEQEQNGTSD DKTSKTENHE DSASKSTAPS CQNPGENQKV SSMSISTAST SPLAGNAHQQ 480 SRFSLIGSSE LEGITQGSPK KPRSNELLQS PTSVQSMNMD MNQSEASNEV SMKFRKDGYS 540 FMGTNTDFMG GFGQYPIGEI GRFDAEQFAP RFPGNGVSLT LGLPHCENLS LSGAHQNLIP 600 NQTMQMGRRL DIDEPNEFGA INPPTPHSSA AYESINLHNR KRFVAQLLPD FVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 356 | 414 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 356 | 414 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.714 | 0.0 | seedling |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441570.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_012441571.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_012441572.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0D2TZD5 | 0.0 | A0A0D2TZD5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G396900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-164 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G396900.1 |
Entrez Gene | 105766599 |
Publications ? help Back to Top | |||
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