PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G337700.3 | ||||||||
Common Name | B456_009G337700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 40742.8 Da PI: 9.506 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.3e-13 | 180 | 222 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR++iN+ +++Lr l+Pk + K++ +iL+ A+eYI +L Gorai.009G337700.3 180 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 222 69*********************66......***************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.93E-9 | 171 | 227 | No hit | No description |
SuperFamily | SSF47459 | 1.03E-14 | 172 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.081 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-12 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-10 | 180 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-14 | 180 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MSFLQEMTGT RVLIPVFSGL IELFTSEHMP KDQNLIELVT SQCNAVLKQE ITTGENYAKA 60 NLDKCYNLPF SISLSTFVPR IELIPPISDS NSHHSLDGSH SGSSPSIEHP PFASDSAYIS 120 QDEQFKQLIG TYYGTKRLRC SKNVPEQQAR FAPDGNKSIK DKTRTTKQPA KEKFHSKNLV 180 MERNRRKKIN DQLFKLRALV PKISKMDRTA ILTDAIEYIG DLLEEKKKLE NELMKIDEEN 240 CEKSNLELKS TLLDKSPKDN MSAVKPNQVS SSLAKMAKME VHVEVNQLTK REFLIKLYYE 300 HKRGSFAKLM EGIDSLGLQV IDANVTTFNG KVLSMFKVEA NRDFQSRKLR DFLTNLTK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603435.1 | 0.0 | PREDICTED: transcription factor bHLH90 isoform X3 | ||||
TrEMBL | A0A0D2TWF6 | 0.0 | A0A0D2TWF6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G337700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-30 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G337700.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|