PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G337700.2

Common Name

B456_009G337700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 375aa MW: 42332.4 Da PI: 9.5061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G337700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.6e-13	196	238	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR++iN+ +++Lr l+Pk + K++ +iL+ A+eYI +L Gorai.009G337700.2 196 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 238 69*******************66......*************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.13E-9	187	243	No hit	No description
SuperFamily	SSF47459	1.1E-14	188	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.081	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	196	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-14	196	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSNQPSWVNH GNPSGSQSSN VEMTGTRVLI PVFSGLIELF TSEHMPKDQN LIELVTSQCN 60 AVLKQEITTG ENYAKANLDK CYNLPFSISL STFVPRIELI PPISDSNSHH SLDGSHSGSS 120 PSIEHPPFAS DSAYISQDEQ FKQLIGTYYG TKRLRCSKNV PEQQARFAPD GNKSIKDKTR 180 TTKQPAKEKF HSKNLVMERN RRKKINDQLF KLRALVPKIS KMDRTAILTD AIEYIGDLLE 240 EKKKLENELM KIDEENCEKS NLELKSTLLD KSPKDNMSAV KPNQVSSSLA KMAKMEVHVE 300 VNQLTKREFL IKLYYEHKRG SFAKLMEGID SLGLQVIDAN VTTFNGKVLS MFKVEANRDF 360 QSRKLRDFLT NLTK*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSNQPSWVNH GNPSGSQSSN VEMTGTRVLI PVFSGLIELF TSEHMPKDQN LIELVTSQCN  60
AVLKQEITTG ENYAKANLDK CYNLPFSISL STFVPRIELI PPISDSNSHH SLDGSHSGSS  120
PSIEHPPFAS DSAYISQDEQ FKQLIGTYYG TKRLRCSKNV PEQQARFAPD GNKSIKDKTR  180
TTKQPAKEKF HSKNLVMERN RRKKINDQLF KLRALVPKIS KMDRTAILTD AIEYIGDLLE  240
EKKKLENELM KIDEENCEKS NLELKSTLLD KSPKDNMSAV KPNQVSSSLA KMAKMEVHVE  300
VNQLTKREFL IKLYYEHKRG SFAKLMEGID SLGLQVIDAN VTTFNGKVLS MFKVEANRDF  360
QSRKLRDFLT NLTK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603435.1	0.0	PREDICTED: transcription factor bHLH90 isoform X3
TrEMBL	A0A0D2SD14	0.0	A0A0D2SD14_GOSRA; Uncharacterized protein
STRING	Gorai.009G337700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	5e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G337700.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]