PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 394aa MW: 45024.2 Da PI: 6.7383

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G333800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.4	3.5e-27	84	165	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Gorai.009G333800.1 84 WVQDETRSLIGFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 165 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-4	74	145	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.293	76	140	IPR017877	Myb-like domain
SMART	SM00717	0.0077	80	142	IPR001005	SANT/Myb domain
CDD	cd12203	4.66E-29	82	147	No hit	No description
Pfam	PF13837	6.0E-21	83	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MYLSEKPRPI DLYKEEGPAA APRDMIIEVT SNGDLPPHHH HHHPPPPHHH HQHQQQQQQQ 60 QMILGESSGE DPEVKAPKKR AETWVQDETR SLIGFRREMD GLFNTSKSNK HLWEQISAKM 120 REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIEEILRE RTKNSYKSPT 180 PPPKPDSFMH FADKGFEDAG ISFGPVEASG RPTLNLERRL DHDGHPLAIT AADAVAASGV 240 PPWNWRETPG NGGDCQSYGG RVITVKYGDY TRRIGIDGTA DAIREAIKSA FGLRTKRSFW 300 LEDEDNIVRS FDREMPLGNY TLHLDEGLAI KVCLYDESDH IPVHTEDKIF YTEDDYREYL 360 ARRGYTGLRD IDGYRSIDNM DDLRPNAIYR GVS*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MYLSEKPRPI DLYKEEGPAA APRDMIIEVT SNGDLPPHHH HHHPPPPHHH HQHQQQQQQQ  60
QMILGESSGE DPEVKAPKKR AETWVQDETR SLIGFRREMD GLFNTSKSNK HLWEQISAKM  120
REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIEEILRE RTKNSYKSPT  180
PPPKPDSFMH FADKGFEDAG ISFGPVEASG RPTLNLERRL DHDGHPLAIT AADAVAASGV  240
PPWNWRETPG NGGDCQSYGG RVITVKYGDY TRRIGIDGTA DAIREAIKSA FGLRTKRSFW  300
LEDEDNIVRS FDREMPLGNY TLHLDEGLAI KVCLYDESDH IPVHTEDKIF YTEDDYREYL  360
ARRGYTGLRD IDGYRSIDNM DDLRPNAIYR GVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-52	78	163	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527209	1e-98	HQ527209.1 Gossypium herbaceum clone NBRI_D_EYT27PB02D0J5N simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440641.1	0.0	PREDICTED: trihelix transcription factor GT-1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D2UXS5	0.0	A0A0D2UXS5_GOSRA; Uncharacterized protein
STRING	Gorai.009G333800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G333800.1
Entrez Gene	105765910

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]