PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G332200.1
Common NameB456_009G332200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 874aa    MW: 97093.5 Da    PI: 5.4694
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G332200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.34.6e-56151294117
                CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                         e ++rwlk+ e++ iL+n+ek++l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+
  Gorai.009G332200.1  15 EaQSRWLKPAEVLFILQNHEKYQLQQEPPRKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEQNPS 105
                         5599*************************************************************************************** PP

                CG-1  94 fqrrcywlLeeelekivlvhylev 117
                         fqrr+yw+L+ ++e+ivlvhy+e 
  Gorai.009G332200.1 106 FQRRSYWMLDPAYEHIVLVHYREI 129
                         *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.5489135IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-7612130IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-4815128IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.96E-17423507IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.3E-8423504IPR013783Immunoglobulin-like fold
CDDcd001022.29E-6423507No hitNo description
PfamPF018336.0E-9423506IPR002909IPT domain
Gene3DG3DSA:1.25.40.206.2E-17618716IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.467622714IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-16625716IPR020683Ankyrin repeat-containing domain
CDDcd002043.32E-15627714No hitNo description
PfamPF127963.7E-7628715IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.553655687IPR002110Ankyrin repeat
SMARTSM002480.0029655687IPR002110Ankyrin repeat
SMARTSM0001526772794IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.419773802IPR000048IQ motif, EF-hand binding site
SMARTSM000154.9830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078831860IPR000048IQ motif, EF-hand binding site
PfamPF006120.022833851IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MMAQSGYDIN NLFREAQSRW LKPAEVLFIL QNHEKYQLQQ EPPRKPTSGS LFLFNKRVLR  60
FFRKDGHSWR KKKDGRTVGE AHERLKVGNV ETLNCYYAHG EQNPSFQRRS YWMLDPAYEH  120
IVLVHYREIN EAKPSSASTV HSPLSNSAST PSPISYTSQN PGFNSLSSDV HESYQNLPSP  180
GSAEVSSDIV IKNNGIDNTV EYPSPDDLQV VQALKRLEEQ LSLNEDSVKE MSQFYGMDGD  240
TNDSEFQEYG REITKQEQQA DLLYEPDNIF QDHLYSQPAR VENYSNSSML LPDGGKNGGH  300
SQVYGNDNSD GIHESQYWKS VFDSCNTQSA VNSKGEPLSS LRMRATEQQE QSHLLNFNGS  360
SIEASPILLH QEVGNVDIPA YSSAIESFDT KFDNYRMFFN QEEIGIPLAT DSSLTIAQKQ  420
KFTIREISPE WGYSSEPTRV IVVGSFLCDP SESVWACMFG ETEVPIEIIQ EGVICCKAPP  480
HLPGKVALCI TSANRESCSE IREFEYRVSS SSSSCIRYNL SHAEAPKSLE ELLLLVRFVK  540
MLLTDSSSQK DSIDSGEKFS EKLKADDESW SHVIEALLIG SGTSSGTIDW LLQELLKDKL  600
QQWLSSRSKE SGDQPGITMS KKEQGIIHMA AGLGFEWALN PILNHGVSIN FRDINGWTAL  660
HWAARFGREK MVAALIASGA SAWAVTDPTS QDPSGETPAS IADSSGHKGL AGYLSEVALM  720
SHLSSLTLEE SELSKGSAAV QAEIAVNSVS QGSLATNEDQ LSLKDTLAAV RNAAQAAARI  780
QNAFRAHSFR KRQQKEDAVI AASVDEYGIS LGEIQNLSTM SKLAFGNARD YNSAALSIQK  840
KFRGWKGRKD FLALRQKVVK IQVSLLFIRI YRL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440590.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0D2QSA30.0A0A0D2QSA3_GOSRA; Uncharacterized protein
STRINGGorai.009G332200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]