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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.009G331300.1 |
| Common Name | B456_009G331300, LOC105767559 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 212aa MW: 23812.7 Da PI: 9.3112 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.009G331300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60 | 3.9e-19 | 57 | 111 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k
Gorai.009G331300.1 57 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASQLKLRPRQVEVWFQNRRARSK 111
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 114.8 | 5.1e-37 | 57 | 145 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+++++Lkr+++ l+++n++L++eveeLr +
Gorai.009G331300.1 57 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASQLKLRPRQVEVWFQNRRARSKLKQTEMEFQYLKRWFEFLTKQNQELQSEVEELR-A 145
69*************************************************************************************9.4 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MAFSSSNLDL TISVPSSARD LDMNRLPSPG SDDEWIASTM EVVVDEENTT NDGVVPRKKL 60
RLSKEQSRLL EESFRQNHTL NPRQKEALAS QLKLRPRQVE VWFQNRRARS KLKQTEMEFQ 120
YLKRWFEFLT KQNQELQSEV EELRALQVGP PTVISPHSRE PLPASTLTTC PRCERVTTIS 180
SRGAGLINTT TSTNNTSTTS AHQSRPSSAA G*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 105 | 113 | RRARSKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
