PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G329400.2
Common NameB456_009G329400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 269aa    MW: 29943.1 Da    PI: 7.2486
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G329400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like521.5e-1612412655
             G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Gorai.009G329400.2 12 KATPKLVLQLMDVKGLTISHVKSHLQMYRS 41
                        8****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-151244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-101241IPR006447Myb domain, plants
SuperFamilySSF466893.23E-51243IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MPLTDLVANI VKATPKLVLQ LMDVKGLTIS HVKSHLQMYR SMRSDYGRQV KSSTYERRQS  60
FDDNHDFDGR VVPIEESCSH LIYNNPFPSK RHGICETRVS NTCSFDDYKQ TMDARKRIKQ  120
DNGGYVWDQT INDSHSLGQP LALSLPHDLY SLNAFRSYSL ATKVEVEDQK RAHAQDAKLV  180
ERNIRRQEEE DGGGGGCELS LSLSLQYHNT SSTSETSSSE AFSSYLRSNY KDCWGSSSTS  240
TSSSSSSSSS VTRRSAINLD LSIALCGN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19720.0flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440504.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A0D2QS370.0A0A0D2QS37_GOSRA; Uncharacterized protein
STRINGGorai.009G329400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-13G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]